For n = 144, again, low temperature results in a stable three-loop structure but at a higher range than n = 72 (T = 300 K, depicted). The thermal fluctuations and longer molecular length result in less prominent peaks as the effect of the crossover of the carbon chains is decreased. At a stable temperature, the curvature is relatively constant throughout the simulation (κ ≈ 0.11 Å-1, for a radius of approximately 9.0 Å). Increasing learn more the temperature to induce unfolding again results in local increases in curvature to isolated sections of the molecule (exceeding 0.3 Å-1)

while the average curvature decreases. Again, it is stressed that the peaks depicted in Figure 7 are stochastic and should be considered as representative only. However, all unfolded systems

demonstrated significant increases in local curvature. Figure 7 Local curvature, κ ( ŝ , t ). (a) Curvature across molecule for n = 72 at a stable low temperature (50 K). The curvature across the molecule is approximately constant (with thermal fluctuations); average, approximately 0.27 Å-1. (b) At a higher temperature (T = 200 K), the structure is unstable and undergoes unfolding. Unfolding induces localized increases in curvature resulting in large peaks (к → 0.5 Å-1) for sections of the molecule length. Once sufficient unfolding occurs, the structure approaches a homogeneous, unfolded state (κ ≈ 0.12 Å-1). (c) Curvature across www.selleckchem.com/products/Temsirolimus.html molecule for n = 144

at a stable low temperature (300 K). Again, the curvature across the molecule is approximately constant; average, approximately 0.11 Å-1. (d) At a higher temperature (T = 725 K), the longer structure is unstable and undergoes unfolding. Again, unfolding induces localized increases in Terminal deoxynucleotidyl transferase curvature resulting in large peaks (к → 0.3 Å-1) for sections of the molecule length. Once sufficient unfolding occurs, the structure approaches a homogeneous, unfolded state (κ ≈ 0.06 Å-1). Critical unfolding temperatures While the specific increases in curvature are non-deterministic, a simple model can be formulated to determine the critical unfolding temperature. To theoretically explore the stability of the folded carbon (or carbyne) loops, first the stored bending strain energy, U b, in the system is defined, where [70] (3) where к denotes the initial imposed curvature of the carbyne chain of length L. During unfolding, it is assumed that there is a decrease in bending energy over portion of the length, αL, where α < 1.0, due to a decrease in curvature from к to βк, where β < 1.0. Thus, the amassed change in energy due this unfolding across the molecular length can be formulated as (4a) Comparing to Equation 3, the change in energy due to local unfolding is a fraction of the total bending energy, as must be the case. The term α(1 - β 2) < 1 by definition, where α captures the length of the chain unfolding and β is the decrease in curvature.