The substrate specificity of the AT domains in the PKSs was predicted using the web server sbspks (Anand et al., 2010). The fosmid sequences were deposited at NCBI under the accession numbers JN121120–JN121124. Fungal mycelia were harvested from an 8-day PDA liquid culture by ultracentrifugation at 10 000 g for 15 min. The mycelia were kept at −80 °C before RNA extraction. The total DAPT RNA was isolated from 100 mg of frozen mycelia using the TRIzol reagent (Invitrogen) and was then treated with an RNeasy MinElute Cleanup kit (Qiagen GmbH, Hilden, Germany). The primers were designed on the exon regions in the fosmid sequences (Table S1). The quantitative real-time PCR (qPCR) was performed

using the Mx3000P™ Real-Time PCR System (Stratagene, Waldbronn, Germany). The 25-μL qPCR reactions contained 5 ng RNA, 0.1 μm primers and

1× Verso™ 1-Step QPCR SYBR Green Mix (ABgene Ltd, Epsom, UK). The thermal cycling conditions were as follows: 50 °C for 15 min; 95 °C for 15 min; followed by 40 cycles of 15 s at 95 °C, 30 s at 55 °C and 30 s at 72 °C; and 95 °C for 30 s, 60 °C for 30 s, and 95 °C for 30 s for the dissociation curve analyses. The elongation factor 1α genes (tef1) of C. militaris (Liu et al., 2009) and Cordyceps ninchukispora strain BCC 26678 obtained from NCBI (Table S2) were used for normalizing the gene expression in strains 1630 and DSM 1153, respectively. The expression level of the target genes (ER) was expressed as A colony radial growth assay was performed by Lumacaftor in vivo inoculating Vorinostat concentration 3 μL spore suspension (1 × 105 spores mL−1) on a sterilized filter paper disk placed in the center of a PDA plate. Images were taken after a 15-day growth at 20 °C in the dark. For microscopic observation, cultures were prepared by inoculating

a small amount of mycelia on a 1-cm3 PDA block placed on a microscopic slide (Stevens, 1981). The blocks were then covered with a coverslip and incubated at 20 °C. After removing the slab, the mycelia on the coverslip were fixed with Carnoy’s fixative and observed using a Zeiss Axioskop microscope (Carl Zeiss, Germany). To compare the biochemical signatures of the two strains, the growth medium and mycelia from 300 mL liquid culture were extracted with acetyl acetate and chloroform/acetone (1 : 1, v/v) and analyzed using high-pressure liquid chromatography (HPLC) coupled with mass spectrometry (MS). Details are provided in the electronic Supporting Information. The internal transcribed spacer (ITS) of the nuclear ribosomal DNA sequences from the two Cordyceps strains was amplified by PCR using the primers listed in Table S1. The sequences were deposited at NCBI with accession numbers JN121119 and JN121122. The reference sequences were downloaded from NCBI (Table S2). A phylogenetic tree was constructed with Bayesian Inference using the beast v1.6.1 package (Drummond & Rambaut, 2007).